Record detail
One row in GLEAM-DB is one paper (PubMed) × one query variant. This page shows structured labels and provenance for that record, not a final variant classification.
Record identity
- Record ID
00d49e21ea29bd1a47bdea62- Release version
- webdb_threshold_completion_missing10_20260508
- PMID
29738522PubMed- Title
- De novo and inherited private variants in MAP1B in periventricular nodular heterotopia.
- Journal
- PLoS genetics
- Year
- 2018
- DOI
- 10.1371/journal.pgen.1007281
- PMC
PMC5965900PMC
Variant information
This section prioritizes normalized variant expressions where available. Non-standard source strings are not shown as canonical HGVS.
- Gene
- LIG4
- Query variant
NM_206937.2:c.1607G>A- Normalized c.HGVS
- c.1607G>A
- Normalized p.HGVS
- p.(Ser536Asn)
- Representative genomic HGVS
- CM000675.1:g.108862010C>T
- Genomic HGVS aliases
- CM000675.1:g.108862010C>T; CM000675.2:g.108209662C>T; LRG_79:g.10873G>A; NC_000013.10:g.108862010C>T; NC_000013.11:g.108209662C>T; NC_000013.9:g.107660011C>T; and 1 more
CoGenEx-PM3 evidence
Evidence status is assigned at the PMID × variant level and should not be interpreted as a final variant-level pathogenicity classification.
- Evidence status
- Phase-unconfirmed biallelic evidence
- Query-evidence confidence
-
High confidence
Exact query c.HGVS was found in retained evidence.
- Phase-confirmed PM3 evidence
- No
- Phase-unconfirmed biallelic evidence
- Yes
- Other patient-level evidence
- No
- PM3 context
- Potential PM3 evidence identified; genotype context not structured
- PM3 evidence items
- 1
- Allelic configuration type
- PM3 evidence context not structured
No retained PM3 partner variant was recorded for this PMID × variant pair.
Candidate context and target validation
Candidate context windows are places selected for audit because the query or its aliases may be relevant. They are not the same as a validated match to the target c.HGVS or p.HGVS expression.
- Candidate context
- Candidate context retained: 7 text windows and 3 table windows
- Context status
- Found in final retained audit context
- Text candidate windows
- 7
- Table candidate windows
- 3
- Target c.HGVS validated
- Yes
- Target p.HGVS validated
- Yes
- Target validation
- Target variant matched with phase-unconfirmed biallelic evidence
Source provenance
- Reviewed source
- Supplementary material
- Supplement used by audit
- Yes
- Supplement available
- Yes
- Reviewed document format
- NXML/JATS full text
- Evidence context scope
- Supplement-focused audit context
- Evidence location
- Supp
Source links and copyright boundary
Use the PMID, PMC and DOI links above to inspect the source publication where access is permitted. GLEAM-DB redistributes structured metadata, evidence labels and provenance fields only; it does not redistribute copyrighted full text, supplementary tables, copied source tables, long evidence contexts, raw source documents, raw LLM outputs or internal processing logs.