Search GLEAM-DB / CoGenEx-PM3

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Input query
Recognized gene
ATM, ATP13A2, BRCA1, BRCA2, BRIP1 and 26 more
Normalized c.HGVS
c.10520C>T, c.11C>T, c.1242G>A, c.1267G>A, c.1488C>A and 44 more
Normalized p.HGVS
p.(=), p.(Ala1309Pro), p.(Ala2080Thr), p.(Ala4Val), p.(Ala807Pro) and 41 more
Matching records
10701
PM3-positive records
246

Results are ordered by PM3-relevant evidence first. Reviewed source only indicates whether main text, supplementary material, or both were reviewed; it is not the evidence conclusion.

Download current query results as TSV
Gene Variant Evidence PM3 context Publication Reviewed source Actions
GBE1 NM_000158.4:c.950G>A Phase-confirmed PM3 evidence
High confidence
Confirmed in trans with c.610G>T; p.V204L
context: Confirmed in trans
33344388
Molecular Diagnosis of Panel-Based Next-Generation Sequencing Approach and Clinical Symptoms in Patients With Glycogen Storage Disease: A Single Center Retrospective Study.
Frontiers in pediatrics, 2020
Main article
Open
CCDC39 NM_181426.2:c.2431C>T Phase-confirmed PM3 evidence
High confidence
Confirmed in trans with c.610-2A > G; c.610-2A>G
context: Confirmed in trans
33005176
Ultrastructural Sperm Flagellum Defects in a Patient With CCDC39 Compound Heterozygous Mutations and Primary Ciliary Dyskinesia/Situs Viscerum Inversus.
Frontiers in genetics, 2020
Main article
Open
MPI NM_002435.3:c.1178G>C Phase-confirmed PM3 evidence
High confidence
Confirmed in trans with c.655C>T; p.Arg219Trp
context: Confirmed in trans
32905087
Mannose phosphate isomerase deficiency-congenital disorder of glycosylation (MPI-CDG) with cerebral venous sinus thrombosis as first and only presenting symptom: A rare but treatable cause of thrombophilia.
JIMD reports, 2020
Main article
Open
RPL3L NM_005061.3:c.922G>A Phase-confirmed PM3 evidence
High confidence
Confirmed in trans with c.566C > T; p.Thr189Met
context: Confirmed in trans
32514796
Bi-allelic missense disease-causing variants in RPL3L associate neonatal dilated cardiomyopathy with muscle-specific ribosome biogenesis.
Human genetics, 2020
Main article
Open
POMT2 NM_013382.7:c.1106G>A Phase-confirmed PM3 evidence
High confidence
PM3 evidence identified; partner variant not structured
context: Confirmed in trans
32494558
Reporting one very rare pathogenic variation c.1106G>A in POMT2 gene.
Intractable & rare diseases research, 2020
Main article
Open
PKD1 NM_001009944.3:c.11875G>C Phase-confirmed PM3 evidence
High confidence
Confirmed in trans with p.P2674S; p.Pro2674Ser
context: Confirmed in trans
32457805
Gene Panel Analysis in a Large Cohort of Patients With Autosomal Dominant Polycystic Kidney Disease Allows the Identification of 80 Potentially Causative Novel Variants and the Characterization of a Complex Genetic Architecture in a Subset of Families.
Frontiers in genetics, 2020
Main article
Open
RYR1 NM_000540.3:c.5309C>T Phase-confirmed PM3 evidence
High confidence
Confirmed in trans with c.7042G > A; p. Glu2348Lys
context: Confirmed in trans
32341817
Clinical Observation: Effect of a Second Transpositioned Variant in a Family with Autosomal Dominant Ryanodine Receptor-1-Related Disease.
Journal of pediatric genetics, 2020
Main article
Open
GAN NM_022041.4:c.236C>T Phase-confirmed PM3 evidence
High confidence
Confirmed in trans with c.1466C > G; T489S; p.T489S
context: Confirmed in trans
32158379
Identification of Novel Compound Heterozygous Mutations in the GAN Gene of a Chinese Patient Diagnosed With Giant Axonal Neuropathy.
Frontiers in neuroscience, 2020
Main article
Open
CFH NM_000186.4:c.388G>A Phase-unconfirmed biallelic evidence
High confidence
Possible compound heterozygous with c.26T>C; Leu9Pro
context: Compound heterozygous candidate
34631043
Outcome of atypical haemolytic uraemic syndrome relapse after eculizumab withdrawal.
Clinical kidney journal, 2020
Main article
Open
BRCA1 NM_007294.4:c.4726G>A Phase-unconfirmed biallelic evidence
High confidence
Potential PM3 evidence identified; genotype context not structured
context: Compound heterozygous candidate
34589950
Somatic and Germline BRCA 1 and 2 Mutations in Advanced NSCLC From the SAFIR02-Lung Trial.
JTO clinical and research reports, 2020
Supplementary material
Open
COL7A1 NM_000094.4:c.5114C>T Phase-unconfirmed biallelic evidence
High confidence
Possible compound heterozygous with c.425A>G; c.5086C>T; p.Arg1696Cys; +1 more
context: Compound heterozygous candidate
33603603
The analysis of echocardiographic results in patients suffering from epidermolysis bullosa.
Postepy dermatologii i alergologii, 2020
Main article
Open
RYR1 NM_000540.3:c.14270G>A Phase-unconfirmed biallelic evidence
High confidence
Homozygous for query variant
context: Homozygous evidence
33598246
Prenatal mucopolysaccharidosis VII: A novel pathogenic variant identified in GUSB gene.
Clinical case reports, 2020
Main article
Open
ZNF423 NM_001379286.1:c.1216C>T Phase-unconfirmed biallelic evidence
High confidence
Confirmed in trans with c.272C>T; p.pro91Leu
context: Confirmed in trans
33531950
An Atypical Presentation of Joubert Syndrome Due to a Novel Mutation in ZNF423 Gene.
Journal of pediatric neurosciences, 2020
Main article
Open
ZNF423 NM_001379286.1:c.296C>T Phase-unconfirmed biallelic evidence
High confidence
Confirmed in trans with c.1192C>T; p.Arg398Trp
context: Confirmed in trans
33531950
An Atypical Presentation of Joubert Syndrome Due to a Novel Mutation in ZNF423 Gene.
Journal of pediatric neurosciences, 2020
Main article
Open
GBA1 NM_000157.4:c.1103G>A Phase-unconfirmed biallelic evidence
High confidence
Possible compound heterozygous with p.Asn409Ser; p.Leu483Pro
context: Compound heterozygous candidate
33473340
Genetic characterization of the Albanian Gaucher disease patient population.
JIMD reports, 2020
Supplementary material
Open
ETFDH NM_004453.4:c.1325C>T Phase-unconfirmed biallelic evidence
High confidence
Homozygous for query variant
context: Homozygous evidence
33473335
Pancreatitis in multiple acyl CoA dehydrogenase deficiency: An underdiagnosed complication.
JIMD reports, 2020
Main article
Open
RYR1 NM_000540.3:c.11321C>T Phase-unconfirmed biallelic evidence
High confidence
Possible compound heterozygous with c.14581 C > T; p.(ArgR4861Cys); p.Arg4861Cys
context: Compound heterozygous candidate
33458582
Dominant or recessive mutations in the RYR1 gene causing central core myopathy in Brazilian patients.
Acta myologica : myopathies and cardiomyopathies : official journal of the Mediterranean Society of Myology, 2020
Main article
Open
RYR1 NM_000540.3:c.13673G>A Phase-unconfirmed biallelic evidence
High confidence
Confirmed in trans with c.14537 C > T; p.(Ala4846Val); p.Ala4846Val
context: Confirmed in trans
33458582
Dominant or recessive mutations in the RYR1 gene causing central core myopathy in Brazilian patients.
Acta myologica : myopathies and cardiomyopathies : official journal of the Mediterranean Society of Myology, 2020
Main article
Open
RYR1 NM_000540.3:c.14581C>T Phase-unconfirmed biallelic evidence
High confidence
Possible compound heterozygous with c.11321 C > T; c.14581 C > T; p.Ala3774Val; +1 more
context: Compound heterozygous candidate
33458582
Dominant or recessive mutations in the RYR1 gene causing central core myopathy in Brazilian patients.
Acta myologica : myopathies and cardiomyopathies : official journal of the Mediterranean Society of Myology, 2020
Main article
Open
GM2A NM_000405.5:c.164C>T Phase-unconfirmed biallelic evidence
High confidence
Homozygous for query variant
context: Homozygous evidence
33456446
Exploiting the Autozygome to Support Previously Published Mendelian Gene-Disease Associations: An Update.
Frontiers in genetics, 2020
Main article
Open