Search GLEAM-DB / CoGenEx-PM3
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Recognized gene
AP4B1, ASNS, ATM, BRCA1, BRCA2 and 16 more
Normalized c.HGVS
c.1043C>G, c.1043C>T, c.1103G>A, c.1103G>T, c.1234C>T and 45 more
Normalized p.HGVS
p.(Ala107Val), p.(Ala1669Val), p.(Ala348Gly), p.(Ala348Val), p.(Ala823Pro) and 45 more
Matching records
849
PM3-positive records
98
Results are ordered by PM3-relevant evidence first. Reviewed source only indicates whether main text, supplementary material, or both were reviewed; it is not the evidence conclusion.
| Gene | Variant | Evidence | PM3 context | Publication | Reviewed source | Actions |
|---|---|---|---|---|---|---|
| TULP1 |
NM_003322.6:c.797G>T
|
Phase-confirmed PM3 evidence
Needs review
|
Confirmed in trans with LOF TULP1 variant
context: Confirmed in trans
|
38450199
Deciphering complexity: TULP1 variants linked to an atypical retinal dystrophy phenotype.
Frontiers in genetics, 2024
|
Main article | |
| GALE |
NM_001008216.2:c.538G>A
|
Phase-confirmed PM3 evidence
High confidence
|
Confirmed in trans with c.796A>C; Ile266Leu; p.Ile266Leu
context: Confirmed in trans
|
38090149
Molecular characterization of novel and rare DNA variants in patients with galactosemia.
Frontiers in genetics, 2023
|
Main article | |
| CDH23 |
NM_022124.6:c.3178C>T
|
Phase-confirmed PM3 evidence
High confidence
|
Confirmed in trans with c.4780C>G; p.(Arg1594Gly)
context: Confirmed in trans
|
37811145
Next-generation sequencing improves precision medicine in hearing loss.
Frontiers in genetics, 2023
|
Main article | |
| GAA |
NM_000152.5:c.1123C>T
|
Phase-confirmed PM3 evidence
High confidence
|
Confirmed in trans with c.−32-13T >G; c.−32-13T>G
context: Confirmed in trans
|
36246652
Development of a clinically validated in vitro functional assay to assess pathogenicity of novel GAA variants in patients with Pompe disease identified via newborn screening.
Frontiers in genetics, 2022
|
Main article | |
| RPGRIP1L |
NM_015272.5:c.3706C>T
|
Phase-confirmed PM3 evidence
High confidence
|
Confirmed in trans with IVS6+1G > A; c.776 + 1G > A; RPGRIP1L-∆Ex6; +1 more
context: Confirmed in trans
|
36061204
Prenatal phenotype analysis and mutation identification of a fetus with meckel gruber syndrome.
Frontiers in genetics, 2022
|
Main article | |
| B3GALT6 |
NM_080605.4:c.883C>T
|
Phase-confirmed PM3 evidence
High confidence
|
Confirmed in trans with c.510_517del; L170fs*268; p.L170fs*268; +1 more
context: Confirmed in trans
|
35734427
Mutant B3GALT6 in a Multiplex Family: A Dominant Variant Co-Segregated With Moderate Malformations.
Frontiers in genetics, 2022
|
Main article | |
| PIEZO1 |
NM_001142864.4:c.4027GAG[1]
|
Phase-confirmed PM3 evidence
Not assessed
|
Confirmed in trans with c.3895C > T; p.R1299C
context: Confirmed in trans
|
34421994
Case Report: Whole Exome Sequencing Revealed Two Novel Mutations of PIEZO1 Implicated in Nonimmune Hydrops Fetalis.
Frontiers in genetics, 2021
|
Main article | |
| CCDC39 |
NM_181426.2:c.2431C>T
|
Phase-confirmed PM3 evidence
High confidence
|
Confirmed in trans with c.610-2A > G; c.610-2A>G
context: Confirmed in trans
|
33005176
Ultrastructural Sperm Flagellum Defects in a Patient With CCDC39 Compound Heterozygous Mutations and Primary Ciliary Dyskinesia/Situs Viscerum Inversus.
Frontiers in genetics, 2020
|
Main article | |
| PKD1 |
NM_001009944.3:c.11875G>C
|
Phase-confirmed PM3 evidence
High confidence
|
Confirmed in trans with p.P2674S; p.Pro2674Ser
context: Confirmed in trans
|
32457805
Gene Panel Analysis in a Large Cohort of Patients With Autosomal Dominant Polycystic Kidney Disease Allows the Identification of 80 Potentially Causative Novel Variants and the Characterization of a Complex Genetic Architecture in a Subset of Families.
Frontiers in genetics, 2020
|
Main article | |
| ATP13A2 |
NM_022089.4:c.2440G>A
|
Phase-unconfirmed biallelic evidence
High confidence
|
Possible compound heterozygous with c.1556C>T; p.Thr519lle
context: Compound heterozygous candidate
|
40799219
Case Report: Novel ATP13A2 pathogenic variants associated with early-onset parkinsonism and a mini-review.
Frontiers in genetics, 2025
|
Main article | |
| PRF1 |
NM_001083116.3:c.559C>T
|
Phase-unconfirmed biallelic evidence
Needs review
|
Possible compound heterozygous with Thr450Met
context: Compound heterozygous candidate
|
40761310
Case Report: Pediatric CNS-isolated hemophagocytic lymphohistiocytosis secondary to uniparental disomy of PRF1 mutation.
Frontiers in genetics, 2025
|
Main article | |
| MCCC1 |
NM_020166.5:c.1894C>T
|
Phase-unconfirmed biallelic evidence
High confidence
|
Possible compound heterozygous with c.1301T>C; c.1679dupA; c.1977G>A; +3 more
context: Compound heterozygous candidate
|
40727585
Expanded newborn screening for inborn errors of metabolism and genetic variants in Xinjiang, China.
Frontiers in genetics, 2025
|
Main article | |
| PIGQ |
NM_004204.5:c.1370T>G
|
Phase-unconfirmed biallelic evidence
High confidence
|
Possible compound heterozygous with c.1199_1201del; Y400del; p.(Tyr400del)
context: Compound heterozygous candidate
|
40718141
Two novel cases with PIGQ-CDG: expansion of the genotype-phenotype spectrum and evaluation of GestaltMatcher as a diagnostic tool.
Frontiers in genetics, 2025
|
Main article | |
| GAA |
NM_000152.5:c.510C>T
|
Phase-unconfirmed biallelic evidence
High confidence
|
Homozygous for query variant
context: Homozygous evidence
|
40626179
Case Report: Incidental late-onset Pompe disease diagnosis in a man with no clinical and instrumental evidence of neuromuscular dysfunction.
Frontiers in genetics, 2025
|
Supplementary material | |
| GBE1 |
NM_000158.4:c.466C>T
|
Phase-unconfirmed biallelic evidence
High confidence
|
Confirmed in trans with c.314_992+1del; deletion of exons 3–7
context: Confirmed in trans
|
40176792
Clinical genetic analysis of an adult polyglucosan body disease (APBD) family caused by the compound heterozygous variant of GBE1 p.R156C and deletion exon 3-7.
Frontiers in genetics, 2025
|
Main article | |
| USH2A |
NM_206933.4:c.13217T>C
|
Phase-unconfirmed biallelic evidence
High confidence
|
Possible compound heterozygous with c.12100G>T; p.(Glu4034Ter)
context: Compound heterozygous candidate
|
39498320
Genetic heterogeneity in autosomal recessive hearing loss: a survey of Brazilian families.
Frontiers in genetics, 2024
|
Main article | |
| HLCS |
NM_001352514.2:c.2266C>T
|
Phase-unconfirmed biallelic evidence
High confidence
|
Possible compound heterozygous with c.782del; Gly261ValfsTer20; del
context: Compound heterozygous candidate
|
39391064
Case report: Two siblings with very late onset of holocarboxylase synthase deficiency and a mini-review.
Frontiers in genetics, 2024
|
Main article | |
| ACADVL |
NM_000018.4:c.881G>A
|
Phase-unconfirmed biallelic evidence
Needs review
|
Possible compound heterozygous with c.553G>A; p.Gly185Ser
context: Compound heterozygous candidate
|
39188284
Four novel variants identified in the ACADVL gene causing very-long-chain acyl-coenzyme A dehydrogenase deficiency in four unrelated Chinese families.
Frontiers in genetics, 2024
|
Main article | |
| ALDH5A1 |
NM_001080.3:c.1558G>A
|
Phase-unconfirmed biallelic evidence
High confidence
|
Possible compound heterozygous with c.1015–2A>C; c.1234C>T; c.612G>A; +4 more
context: Compound heterozygous candidate
|
39011401
Succinic semialdehyde dehydrogenase deficiency: a metabolic and genomic approach to diagnosis.
Frontiers in genetics, 2024
|
Main article | |
| ALDH5A1 |
NM_001080.3:c.649G>A
|
Phase-unconfirmed biallelic evidence
High confidence
|
Homozygous for query variant
context: Homozygous evidence
|
39011401
Succinic semialdehyde dehydrogenase deficiency: a metabolic and genomic approach to diagnosis.
Frontiers in genetics, 2024
|
Main article | |