Search GLEAM-DB / CoGenEx-PM3

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Input query
Recognized gene
AP4B1, ASNS, ATM, BRCA1, BRCA2 and 16 more
Normalized c.HGVS
c.1043C>G, c.1043C>T, c.1103G>A, c.1103G>T, c.1234C>T and 45 more
Normalized p.HGVS
p.(Ala107Val), p.(Ala1669Val), p.(Ala348Gly), p.(Ala348Val), p.(Ala823Pro) and 45 more
Matching records
849
PM3-positive records
98

Results are ordered by PM3-relevant evidence first. Reviewed source only indicates whether main text, supplementary material, or both were reviewed; it is not the evidence conclusion.

Download current query results as TSV
Gene Variant Evidence PM3 context Publication Reviewed source Actions
TULP1 NM_003322.6:c.797G>T Phase-confirmed PM3 evidence
Needs review
Confirmed in trans with LOF TULP1 variant
context: Confirmed in trans
38450199
Deciphering complexity: TULP1 variants linked to an atypical retinal dystrophy phenotype.
Frontiers in genetics, 2024
Main article
Open
GALE NM_001008216.2:c.538G>A Phase-confirmed PM3 evidence
High confidence
Confirmed in trans with c.796A>C; Ile266Leu; p.Ile266Leu
context: Confirmed in trans
38090149
Molecular characterization of novel and rare DNA variants in patients with galactosemia.
Frontiers in genetics, 2023
Main article
Open
CDH23 NM_022124.6:c.3178C>T Phase-confirmed PM3 evidence
High confidence
Confirmed in trans with c.4780C>G; p.(Arg1594Gly)
context: Confirmed in trans
37811145
Next-generation sequencing improves precision medicine in hearing loss.
Frontiers in genetics, 2023
Main article
Open
GAA NM_000152.5:c.1123C>T Phase-confirmed PM3 evidence
High confidence
Confirmed in trans with c.−32-13T >G; c.−32-13T>G
context: Confirmed in trans
36246652
Development of a clinically validated in vitro functional assay to assess pathogenicity of novel GAA variants in patients with Pompe disease identified via newborn screening.
Frontiers in genetics, 2022
Main article
Open
RPGRIP1L NM_015272.5:c.3706C>T Phase-confirmed PM3 evidence
High confidence
Confirmed in trans with IVS6+1G > A; c.776 + 1G > A; RPGRIP1L-∆Ex6; +1 more
context: Confirmed in trans
36061204
Prenatal phenotype analysis and mutation identification of a fetus with meckel gruber syndrome.
Frontiers in genetics, 2022
Main article
Open
B3GALT6 NM_080605.4:c.883C>T Phase-confirmed PM3 evidence
High confidence
Confirmed in trans with c.510_517del; L170fs*268; p.L170fs*268; +1 more
context: Confirmed in trans
35734427
Mutant B3GALT6 in a Multiplex Family: A Dominant Variant Co-Segregated With Moderate Malformations.
Frontiers in genetics, 2022
Main article
Open
PIEZO1 NM_001142864.4:c.4027GAG[1] Phase-confirmed PM3 evidence
Not assessed
Confirmed in trans with c.3895C > T; p.R1299C
context: Confirmed in trans
34421994
Case Report: Whole Exome Sequencing Revealed Two Novel Mutations of PIEZO1 Implicated in Nonimmune Hydrops Fetalis.
Frontiers in genetics, 2021
Main article
Open
CCDC39 NM_181426.2:c.2431C>T Phase-confirmed PM3 evidence
High confidence
Confirmed in trans with c.610-2A > G; c.610-2A>G
context: Confirmed in trans
33005176
Ultrastructural Sperm Flagellum Defects in a Patient With CCDC39 Compound Heterozygous Mutations and Primary Ciliary Dyskinesia/Situs Viscerum Inversus.
Frontiers in genetics, 2020
Main article
Open
PKD1 NM_001009944.3:c.11875G>C Phase-confirmed PM3 evidence
High confidence
Confirmed in trans with p.P2674S; p.Pro2674Ser
context: Confirmed in trans
32457805
Gene Panel Analysis in a Large Cohort of Patients With Autosomal Dominant Polycystic Kidney Disease Allows the Identification of 80 Potentially Causative Novel Variants and the Characterization of a Complex Genetic Architecture in a Subset of Families.
Frontiers in genetics, 2020
Main article
Open
ATP13A2 NM_022089.4:c.2440G>A Phase-unconfirmed biallelic evidence
High confidence
Possible compound heterozygous with c.1556C>T; p.Thr519lle
context: Compound heterozygous candidate
40799219
Case Report: Novel ATP13A2 pathogenic variants associated with early-onset parkinsonism and a mini-review.
Frontiers in genetics, 2025
Main article
Open
PRF1 NM_001083116.3:c.559C>T Phase-unconfirmed biallelic evidence
Needs review
Possible compound heterozygous with Thr450Met
context: Compound heterozygous candidate
40761310
Case Report: Pediatric CNS-isolated hemophagocytic lymphohistiocytosis secondary to uniparental disomy of PRF1 mutation.
Frontiers in genetics, 2025
Main article
Open
MCCC1 NM_020166.5:c.1894C>T Phase-unconfirmed biallelic evidence
High confidence
Possible compound heterozygous with c.1301T>C; c.1679dupA; c.1977G>A; +3 more
context: Compound heterozygous candidate
40727585
Expanded newborn screening for inborn errors of metabolism and genetic variants in Xinjiang, China.
Frontiers in genetics, 2025
Main article
Open
PIGQ NM_004204.5:c.1370T>G Phase-unconfirmed biallelic evidence
High confidence
Possible compound heterozygous with c.1199_1201del; Y400del; p.(Tyr400del)
context: Compound heterozygous candidate
40718141
Two novel cases with PIGQ-CDG: expansion of the genotype-phenotype spectrum and evaluation of GestaltMatcher as a diagnostic tool.
Frontiers in genetics, 2025
Main article
Open
GAA NM_000152.5:c.510C>T Phase-unconfirmed biallelic evidence
High confidence
Homozygous for query variant
context: Homozygous evidence
40626179
Case Report: Incidental late-onset Pompe disease diagnosis in a man with no clinical and instrumental evidence of neuromuscular dysfunction.
Frontiers in genetics, 2025
Supplementary material
Open
GBE1 NM_000158.4:c.466C>T Phase-unconfirmed biallelic evidence
High confidence
Confirmed in trans with c.314_992+1del; deletion of exons 3–7
context: Confirmed in trans
40176792
Clinical genetic analysis of an adult polyglucosan body disease (APBD) family caused by the compound heterozygous variant of GBE1 p.R156C and deletion exon 3-7.
Frontiers in genetics, 2025
Main article
Open
USH2A NM_206933.4:c.13217T>C Phase-unconfirmed biallelic evidence
High confidence
Possible compound heterozygous with c.12100G>T; p.(Glu4034Ter)
context: Compound heterozygous candidate
39498320
Genetic heterogeneity in autosomal recessive hearing loss: a survey of Brazilian families.
Frontiers in genetics, 2024
Main article
Open
HLCS NM_001352514.2:c.2266C>T Phase-unconfirmed biallelic evidence
High confidence
Possible compound heterozygous with c.782del; Gly261ValfsTer20; del
context: Compound heterozygous candidate
39391064
Case report: Two siblings with very late onset of holocarboxylase synthase deficiency and a mini-review.
Frontiers in genetics, 2024
Main article
Open
ACADVL NM_000018.4:c.881G>A Phase-unconfirmed biallelic evidence
Needs review
Possible compound heterozygous with c.553G>A; p.Gly185Ser
context: Compound heterozygous candidate
39188284
Four novel variants identified in the ACADVL gene causing very-long-chain acyl-coenzyme A dehydrogenase deficiency in four unrelated Chinese families.
Frontiers in genetics, 2024
Main article
Open
ALDH5A1 NM_001080.3:c.1558G>A Phase-unconfirmed biallelic evidence
High confidence
Possible compound heterozygous with c.1015–2A>C; c.1234C>T; c.612G>A; +4 more
context: Compound heterozygous candidate
39011401
Succinic semialdehyde dehydrogenase deficiency: a metabolic and genomic approach to diagnosis.
Frontiers in genetics, 2024
Main article
Open
ALDH5A1 NM_001080.3:c.649G>A Phase-unconfirmed biallelic evidence
High confidence
Homozygous for query variant
context: Homozygous evidence
39011401
Succinic semialdehyde dehydrogenase deficiency: a metabolic and genomic approach to diagnosis.
Frontiers in genetics, 2024
Main article
Open